Genome BioInformatics Research Lab
Help  |  News  |  People    Research    Software  |  Publications  |  Links
Resources & Datasets  |  Gene Predictions  |  Seminars & Courses

  IMIM * UPF * CRG * GRIB HOME GENCODE
 
GENCODE PROJECT
  
 
ENCODE logo

 

  
EGASP 05 Analysis Workshop

 
The EGASP 05 analysis workshop was held at the Wellcome Trust Conference Center in Hinxton, UK, on May 6-7 2005.
Here you can find some ppt/pdf presentations that were given by EGASP speakers.
A photo gallery has been uploaded as well (pictures by Josep F. Abril, IMIM).

Introduction


Roderic Guigo (IMIM, Barcelona): Introductory remarks, assessment of predictions
Peter Good (NIH/NHGRI): The ENCODE Project
France Denoeud (IMIM, Barcelona): The HAVANA/ENCODE collaboration
Alexandre Reymond (University of Geneva): GENCODE experimental verification
Paul Flicek (EBI, Hinxton): EGASP 2005 Evaluation Protocol
Vladimir Bajic (Institute for Infocomm Research, Singapore): Promoter Prediction Assessment


Presentations by EGASP participants


David Carter (Sanger Institute, Hinxton): DOGFISH
Damian Keefe (EBI, Hinxton): SPIDA
Flavio Mignone (University of Milan): CSTminer
Jean Thierry-Mieg (NCBI): AceView
Michael Brent (Washington University): N-SCAN and Pairagon
Mario Stanke (University of Goettingen): AUGUSTUS: ab initio, dual-genome, EST/mRNA/Protein -based methods
Paul Flicek (EBI, Hinxton): TWINSCAN-MARS
Sourav Chatterji (UC Berkeley): SAGA
Sarah Djebali (ENS Paris): EXOGEAN
Steve Searle (Sanger Institute, Hinxton): EnsEMBL Gene Predictions
Tomas Vinar (University of Waterloo): ExonHunter
Uwe Ohler (Duke University): McPromoter, Uncover
Victor Solovyev (University of London/Softberry Inc.): FProm, FGenes++, PseudogeneFinder


Miscellaneous/Conclusion remarks


Martin Reese (Omicia): GASP 1999 and EGASP 2005
Paul Bertone (Yale University): Pseudogenes in the ENCODE project
Tom Gingeras (Affymetrix): The GENCODE/Affymetrix collaboration





 
  Disclaimer GENCODE webmaster