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3. DATABASE STATISTICS
 
 

 
The ABS database v 1.0 contains:

- 650 experimentally verified binding sites (3.08 sites/sequence)
- 211 promoter sequences (2.11 homologs/gene)
- 100 gene entries
- Site coverage: 8624 nucleotides
- Average site length: 13.26 nucleotides
- 68 different transcription factors (TF occurrences listing):

AML: 6
AP1: 8
AP2: 4
AP2A: 4
CAAT: 13
CEBP: 37
CETS: 4
CJUN: 6
CMYC: 6
COUP: 2
CREB: 19
CUTL: 2
E2: 2
E2F: 2
E2F1: 16
E47: 4
EGR1: 10
ETS1: 4
FXR: 4
GATA3: 8
GATA6: 2
GC: 6
GR: 3
HIF1: 2
HLTF: 2
HMGI: 4
HNF1: 27
HNF3: 6
HNF3B: 12
HNF4: 10
HNF6: 4
HOX: 4
HP1: 3
HSF1: 4
IPF1: 2
IRF: 2
M1: 2
MAZ: 2
MEF2: 17
MEF3: 2
MITF: 4
MTF1: 10
MYB: 4
MYF: 4
MYOD: 21
MZF1: 2
NF1: 6
NFAT: 24
NFKB: 8
NFY: 4
NKX2: 7
NRL: 3
OCT: 2
OLF1: 2
P53: 4
POU1F1: 10
POU2F1: 2
RAR: 4
RFX1: 2
RXR: 2
SMAD: 4
SP1: 89
SRF: 36
STAT3: 2
TBP: 95
TEF1: 7
USF: 9
VDR: 6
TF distribution in ABS v 1.0 Species distribution in ABS v 1.0
Positional distribution Number of annotations per sequence


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ABS is under GNU General Public License.

 
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